A Possible Approach to the Development of Therapies Targeting TDP-43 Aggregation
A number of proteins in the body are capable of misfolding or otherwise becoming altered in ways that allow the formation of aggregates, solid clumps that precipitate from solution to cause harm to the normal function of cells. Those harms might be direct, or result from a surrounding biochemistry of interactions with the aggregates that generates damaging molecules, or be driven by a maladaptive inflammatory response to the presence of the protein aggregates. Much of the research related to protein aggregates is focused on the aging brain and neurodegenerative conditions, as these are largely characterized by the formation of various forms of protein aggregate, such as amyloid-β, tau, and α-synuclein.
TDP-43 is a more recent addition to the established list of protein aggregates, with its own Alzheimer's-like condition called limbic-predominant age-related TDP-43 encephalopathy (LATE). As research into TDP-43 aggregation progresses, it is becoming clear that it is a common form of pathology, perhaps often misdiagnosed as Alzheimer's disease. TDP-43 aggregation is also important in amyotrophic lateral sclerosis (ALS) and potentially other conditions. Generally, one should expect all forms of protein aggregation to be present in the aging brain; the various named conditions develop when one or more of these protein aggregates pass the threshold needed to produce outright, evident pathology. Even prior to this, they cause harm, however. Protein aggregation should be treated as a form of damage, and therapies developed to minimize it as best possible.
Neurodegenerative disease ALS: Cellular repair system could prevent protein aggregation
In amyotrophic lateral sclerosis (ALS), poorly soluble protein aggregates accumulate in motor neurons. Among other proteins, these aggregates consist of TDP-43, which plays various critical roles in cellular RNA metabolism. While in healthy cells TDP-43 is mainly found in soluble form in the cell nucleus, in ALS patients it forms poorly soluble aggregates that mainly accumulate outside the cell nucleus. This means that TDP-43 loses its functionality, as well as ultimately leading to the death of the motor neurons.
Researchers exposed cells to stress, for example by increasing the temperature or using a chemical substance. As a result, some TDP-43 was released from the cell nucleus into the cytosol, where it accumulated in so-called stress granules. "The formation of such stress granules is a normal process and serves the cell as a temporary protective space for proteins so that they are immediately available to the cell once the stress has subsided. However, if TDP-43 is mutated, as it is in the cells of many ALS patients, the stress granules persist, increasingly solidify and ultimately damage the neurons."
The scientists successfully prevented TDP-43 from leaving the cell nucleus under stress by linking it with the cell's "roadside assistance" - a protein called SUMO - which directed TDP-43 to a cellular "mechanic", the so-called nuclear bodies. As a result, TDP-43 remains soluble, and the nuclear bodies - like a mechanic - ensure that harmful forms of TDP-43 are restored or broken down by the cellular recycling system. Insoluble protein aggregates that damage or even kill cells would therefore be prevented from forming in the first place. The team of researchers is now looking for future drug candidates in the form of chemical compounds that bring SUMO and TDP-43 together.
Induced proximity to PML protects TDP-43 from aggregation via SUMO-ubiquitin networks
The established role of cytosolic and nuclear inclusions of TDP-43 in the pathogenesis of neurodegenerative disorders has multiplied efforts to understand mechanisms that control TDP-43 aggregation and has spurred searches for approaches limiting this process. Formation and clearance of TDP-43 aggregates are controlled by an intricate interplay of cellular proteostasis systems that involve post-translational modifications and frequently rely on spatial control.
We demonstrate that attachment of the ubiquitin-like SUMO2 modifier compartmentalizes TDP-43 in promyelocytic leukemia protein (PML) nuclear bodies and limits the aggregation of TDP-43 in response to proteotoxic stress. Exploiting this pathway through proximity-inducing recruitment of TDP-43 to PML triggers a SUMOylation-ubiquitylation cascade protecting TDP-43 from stress-induced insolubility. The protective function of PML is mediated by ubiquitylation in conjunction with the p97 disaggregase. Altogether, we demonstrate that SUMO-ubiquitin networks protect cells from insoluble TDP-43 inclusions and propose the functionalization of PML as a potential future therapeutic avenue countering aggregation.