Inhibiting the H3K9me3 Epigenetic Modification Reduces Pathology in Mouse Models of Alzheimer's Disease
Nuclear DNA structure determines which genes are transcribed into RNA. The molecules making up the machineries of transcription move around the nucleus to interact with every sequence of DNA they can reach. Regions of DNA that are spooled onto histone molecules and compacted are hidden, and those genes are thus silenced and not expressed. Regions of DNA that are unspooled are accessible to transcription machinery, and those genes are actively expressed. Nuclear DNA structure changes constantly, controlled by the addition and removal of decorating molecules at specific locations on DNA and histones. This is known as epigenetic regulation, a highly complex layer of interaction between cell state and pattern of gene expression.
Epigenetic control of DNA structure changes with age. Some of this may be a consequence of repeated cycles of DNA repairrand consequent depletion of molecules needed to maintain the normal status quo. The rest is a downstream consequence of other age-related changes, some of it useful, some of it maladaptive. Searching for age-related changes in epigenetic marks that are both important and harmful is not a bad strategy at this point in the state of knowledge regarding epigenetics and aging, but it is complicated by the context-dependent nature of much of epigenetics. Nonetheless, by this point in the study of epigenetics some epigenetic decorations are well studied enough to have recognizable names, which largely means the methylation of specific locations on specific histone molecules, as these affect the expression of large numbers of genes. Today's open access paper is any example of a successful foray into this part of the field, yielding a possible approach to therapies for neurodegenerative conditions.
Epigenetic dysregulation is increasingly linked to aging and neurodegeneration, yet its contribution to retinal and brain pathology in Alzheimer's disease (AD) remains unclear. We quantified the repressive epigenetic mark histone H3 lysine 9 trimethylation (H3K9me3) in post mortem retinas and brains from donors spanning normal cognition, mild cognitive impairment, and AD dementia. H3K9me3 increased early across the AD continuum in both brain and retina, correlating with cognitive impairment and neuropathological burden. H3K9me3 levels were strongly correlated between matched brains and retinas.
We characterized the in vitro inhibitory activity of ETP69, an epidithiodiketopiperazine, against suppressor of variegation 3-9 homologue 1 (SUV39H1) and other methyltransferases. In two transgenic AD mouse models (APPswe/PS1dE9 and APPswe/tauP301L/PS1tm1Mpm), we assessed ETP69 effects on cerebral H3 methylation, behavior, AD-like pathology, synaptic integrity, and proteomic profiles. This pharmacological H3K9me3 reduction consistently reduced cerebral H3K9me3 relative to other histone marks assessed, mitigated AD-like pathology, preserved synapses, and improved short-term and long-term cognitive and visual performance. Proteomics revealed that H3K9me3 derepression re-established retinal and brain proteostasis and remodeled innate immune pathways and brain-derived neurotrophic factor/nerve growth factor-inducible protein (BDNF/VGF)-granin signaling.