Messenger RNA Quality Control in Aging and Age-Related Disease
If the activities of a cell appear precisely engineered and highly efficient, it is because every layer of cellular activity is monitored by some form of quality control mechanism. A cell is a collection of molecules moving at incredible speeds, where every possible collision happens countless times per second. All of the damaging, unwanted reactions that can occur between molecular structures in the cell do in fact happen constantly. Breakage happens constantly. Manufacture of new structures produces flawed outcomes constantly. But all of these issues are cleaned up as they occur. The processes of quality control and maintenance that undertake this cleanup work are collectively vital to cell health and cell function.
Messenger RNA is manufactured as the first stage of gene expression. The transcriptional machinery of the cell nucleus assembles messenger RNA molecules based on their genetic blueprints before sending them off to be translated into proteins. Following the remarks above, many flawed messenger RNA molecules result from the constant transcriptional activity in the cell nucleus and must be dealt with by a layer of messenger RNA quality control. As is the case for most of the processes involved in gene expression, this quality control is fairly well understood by the research community, likely becomes meaningfully less effective with advancing age, but measuring specific aspects of this quality control process can be challenging, leading to debate.
The function of mRNA quality control in aging and age-related diseases
Aging is accompanied by a gradual decline in physiological functions and an exponential increase in susceptibility to multiple age-associated diseases. Aging is caused by the impairment of biological systems at multiple levels. At the cellular level, the accumulation of senescent cells, which stably stop proliferation, is considered as a major cause of aging. At the molecular level, genomic instability and reduced proteostasis contribute to accelerating both cellular senescence and organismal aging. Recent studies also suggest important roles of messenger RNA (mRNA) quality control systems in aging. Studies using the nematode Caenorhabditis elegans demonstrated the important function of mRNA quality control and homeostatic regulation of splicing in organismal aging. In addition, age-dependent accumulation of stalled ribosomes, which are closely associated with co-translational mRNA quality control systems, contributes to aging and longevity in the budding yeast Saccharomyces cerevisiae and C. elegans.
Eukaryotic cells are equipped with multiple mRNA surveillance systems that eliminate abnormal transcripts. Nonsense-mediated mRNA decay (NMD), a key RNA surveillance process, targets mRNA transcripts that contain premature termination codons (PTCs). Nonstop decay (NSD) eliminates mRNAs without stop codons that cause ribosome stalling at the poly(A) tail, and conventionally no-go decay (NGD) removes mRNAs with internal stem-loop structures or rare codons that cause internal ribosome stalling. Although poly(A)-mediated ribosome stalling has been classically associated with NSD, recent studies showed that poly(A) stretches can also trigger ribosome collisions and activate NGD, indicating a partial mechanistic overlap between the two pathways. Slow elongation caused by non-optimal or rare codons activates a noncanonical mRNA surveillance pathway, codon-optimality-mediated decay, rather than NGD, and the decay of such mRNAs is mechanistically distinct from NGD.
Impairments of NMD, NSD, and NGD contribute to physiological defects such as premature aging and neurodegeneration, highlighting the importance of proper maintenance of mRNA quality control in organismal health. Here, we discuss the critical roles of these pathways in maintaining mRNA quality and preventing the accumulation of aberrant transcripts, which can contribute to aging and age-related disorders. Specifically, we discuss the function of NMD in aging processes and age-related diseases, including cancer and neurodegenerative disorders. We also review the safeguarding roles of NSD and NGD in preventing the accumulation of faulty mRNAs and proteins associated with various diseases. We explore the potential functions of additional mRNA surveillance and the associated signaling pathways, such as ribosome-associated quality control (RQC), in aging and age-related diseases. Understanding the intricate relationship between mRNA surveillance mechanisms and aging may provide key information for developing potential therapeutics that boost these pathways for delaying aging and treating age-related diseases.